1

Mathematical Aspects of the 'Tree of Life'

Charles Semple and Mike Steel
Journal:
Math Horizons
Year:
2009
Language:
english
File:
PDF, 1.16 MB
english, 2009
3

Replacing cliques by stars in quasi-median graphs

Katharina T. Huber, Vincent Moulton, Charles Semple
Journal:
Discrete Applied Mathematics
Year:
2004
Language:
english
File:
PDF, 264 KB
english, 2004
4

Mathematical Aspects of the ‘Tree of Life’

Semple, Charles, Steel, Mike
Journal:
Math Horizons
Year:
2009
Language:
english
File:
PDF, 980 KB
english, 2009
5

The geoarchaeology of route systems in northern Syria

Tony J. Wilkinson, Charles French, Jason A. Ur, Miranda Semple
Journal:
Geoarchaeology
Year:
2010
Language:
english
File:
PDF, 993 KB
english, 2010
7

On Matroids of Branch-Width Three

Rhiannon Hall, James Oxley, Charles Semple, Geoff Whittle
Journal:
Journal of Combinatorial Theory, Series B
Year:
2002
Language:
english
File:
PDF, 242 KB
english, 2002
8

A characterization for a set of partial partitions to define an X-tree

Charles Semple, Mike Steel
Journal:
Discrete Mathematics
Year:
2002
Language:
english
File:
PDF, 169 KB
english, 2002
9

Constructing a 3-tree for a 3-connected matroid

James Oxley, Charles Semple
Journal:
Advances in Applied Mathematics
Year:
2013
Language:
english
File:
PDF, 412 KB
english, 2013
15

Quantifying Hybridization in Realistic Time

Collins, Joshua, Linz, Simone, Semple, Charles
Journal:
Journal of Computational Biology
Year:
2011
Language:
english
File:
PDF, 726 KB
english, 2011
16

Counting Trees in a Phylogenetic Network Is \#P-Complete

Linz, Simone, John, Katherine St., Semple, Charles
Journal:
SIAM Journal on Computing
Year:
2013
Language:
english
File:
PDF, 186 KB
english, 2013
17

An Algorithm for Constructing ak-Tree for ak-Connected Matroid

Brettell, Nick, Semple, Charles
Journal:
Annals of Combinatorics
Year:
2015
Language:
english
File:
PDF, 731 KB
english, 2015
18

A Framework for Representing Reticulate Evolution

Mihaela Baroni, Charles Semple, Mike Steel
Journal:
Annals of Combinatorics
Year:
2005
Language:
english
File:
PDF, 267 KB
english, 2005
19

On Maximum-sized k-Regular Matroids

Charles Semple
Journal:
Graphs and Combinatorics
Year:
1999
Language:
english
File:
PDF, 194 KB
english, 1999
21

When is a Phylogenetic Network Simply an Amalgamation of Two Trees?

Semple, Charles, Simpson, Jack
Journal:
Bulletin of Mathematical Biology
Year:
2018
Language:
english
File:
PDF, 546 KB
english, 2018
22

On the Computational Complexity of the Rooted Subtree Prune and Regraft Distance

Magnus Bordewich, Charles Semple
Journal:
Annals of Combinatorics
Year:
2005
Language:
english
File:
PDF, 212 KB
english, 2005
23

Quantifying the Extent of Lateral Gene Transfer Required to

Leo van Iersel, Charles Semple, Mike Steel
Journal:
Bulletin of Mathematical Biology
Year:
2010
Language:
english
File:
PDF, 437 KB
english, 2010
24

Counting consistent phylogenetic trees is #P-complete

Magnus Bordewich, Charles Semple, John Talbot
Journal:
Advances in Applied Mathematics
Year:
2004
Language:
english
File:
PDF, 258 KB
english, 2004
26

Quarnet Inference Rules for Level-1 Networks

Huber, Katharina T., Moulton, Vincent, Semple, Charles, Wu, Taoyang
Journal:
Bulletin of Mathematical Biology
Year:
2018
Language:
english
File:
PDF, 600 KB
english, 2018
28

Generalized Δ–Y Exchange and k-Regular Matroids

James Oxley, Charles Semple, Dirk Vertigan
Journal:
Journal of Combinatorial Theory, Series B
Year:
2000
Language:
english
File:
PDF, 490 KB
english, 2000
29

Note on the hybridization number and subtree distance in phylogenetics

Peter J. Humphries, Charles Semple
Journal:
Applied Mathematics Letters
Year:
2009
Language:
english
File:
PDF, 452 KB
english, 2009
30

Wild triangles in 3-connected matroids

James Oxley, Charles Semple, Geoff Whittle
Journal:
Journal of Combinatorial Theory, Series B
Year:
2008
Language:
english
File:
PDF, 499 KB
english, 2008
34

Matroids with many small circuits and cocircuits

Oxley, James, Pfeil, Simon, Semple, Charles, Whittle, Geoff
Journal:
Advances in Applied Mathematics
Year:
2019
Language:
english
File:
PDF, 511 KB
english, 2019
35

Exposing 3-separations in 3-connected matroids

James Oxley, Charles Semple, Geoff Whittle
Journal:
Advances in Applied Mathematics
Year:
2011
Language:
english
File:
PDF, 654 KB
english, 2011
36

The structure of equivalent 3-separations in a 3-connected matroid

Rhiannon Hall, James Oxley, Charles Semple
Journal:
Advances in Applied Mathematics
Year:
2005
Language:
english
File:
PDF, 528 KB
english, 2005
37

A Cluster Reduction for Computing the Subtree Distance Between Phylogenies

Simone Linz, Charles Semple
Journal:
Annals of Combinatorics
Year:
2011
Language:
english
File:
PDF, 1.71 MB
english, 2011
38

Mathematical perspectives of phylogenetic inference

Charles Semple
Journal:
Trends in Ecology & Evolution
Year:
2005
Language:
english
File:
PDF, 50 KB
english, 2005
40

Tree Representations of Non-symmetric Group-Valued Proximities

Charles Semple, Mike Steel
Journal:
Advances in Applied Mathematics
Year:
1999
Language:
english
File:
PDF, 158 KB
english, 1999
41

A class of phylogenetic networks reconstructable from ancestral profiles

Erdős, Péter L., Semple, Charles, Steel, Mike
Journal:
Mathematical Biosciences
Year:
2019
Language:
english
File:
PDF, 1.02 MB
english, 2019
42

Hybrids in Real Time

Baroni, Mihaela, Semple, Charles, Steel, Mike
Journal:
Systematic Biology
Year:
2006
Language:
english
File:
PDF, 1.33 MB
english, 2006
45

A supertree method for rooted trees

Charles Semple, Mike Steel
Journal:
Discrete Applied Mathematics
Year:
2000
Language:
english
File:
PDF, 131 KB
english, 2000
47

A Class of General Supertree Methods for Nested Taxa

Daniel, Philip, Semple, Charles
Journal:
SIAM Journal on Discrete Mathematics
Year:
2005
Language:
english
File:
PDF, 209 KB
english, 2005